MolNFT v1 · #114192 · protein

Crystal structure of heme binding protein hmut H141A mutant

5B4Z · ABC-type transporter, periplasmic component: “Crystal structure of heme binding protein hmut H141A mutant”. X-ray diffraction, 1 ligand (HEM), 3 pockets (best druggability 0.54). MolNFT v1 #114192 on GenesisL1: 3D structure, binding…

PDB: 5B4Z
Type: protein
Length: 309 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ABC-type transporter, periplasmic component
UniProt: Q8NTB8
Ligands: HEM
Pockets: 3 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ABC-type transporter, periplasmic component	protein	309	41% helix, 18% strand	Q8NTB8

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	67	0.54	0.87	28	empty
2	124	0.49	0.79	20	HEM
3	61	0.26	0.73	16	empty

Compared structures

5B4Z · Crystal structure of heme binding protein HmuT H141A mutant · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8NTB8
Elsewhere: RCSB PDB 5B4Z · PDBe 5B4Z · UniProt Q8NTB8

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