Research workbench
Crystal structure of heme binding protein hmut H141A mutant
Analyse Crystal structure of heme binding protein hmut H141A mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5B4Z
- Type
- protein
- Length
- 309 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ABC-type transporter, periplasmic component
- UniProt
- Q8NTB8
- Ligands
- HEM
- Pockets
- 3 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ABC-type transporter, periplasmic component | protein | 309 | 41% helix, 18% strand | Q8NTB8 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.54 | 0.87 | 28 | empty |
| 2 | 124 | 0.49 | 0.79 | 20 | HEM |
| 3 | 61 | 0.26 | 0.73 | 16 | empty |
Compared structures
- 5B4Z · Crystal structure of heme binding protein HmuT H141A mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NTB8
- Elsewhere: RCSB PDB 5B4Z · PDBe 5B4Z · UniProt Q8NTB8
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