MolNFT v1 · #114010 · protein
Crystal structure of mbp-saglb fusion protein with a 20-residue spacer in the connector helix
5AZA · Maltose-binding periplasmic PROTEIN,OLIGOSACCHARYL…: “Crystal structure of mbp-saglb fusion protein with a 20-residue spacer in the connector helix”. X-ray diffraction, 2 ligands (GLC, CA), 8 pockets (best druggability 0.72). MolNFT…
- PDB
- 5AZA
- Type
- protein
- Length
- 836 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Maltose-binding periplasmic PROTEIN,OLIGOSACCHARYL transferase STT3 subunit related…
- UniProt
- P0AEX9, I6V0B8
- Ligands
- GLC, CA
- Pockets
- 8 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Maltose-binding periplasmic PROTEIN,OLIGOSACCHARYL transferase STT3 subunit related protein | protein | 836 | 31% helix, 34% strand | P0AEX9, I6V0B8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 915 | 0.72 | 0.77 | 85 | empty |
| 2 | 289 | 0.72 | 0.85 | 29 | GLC |
| 3 | 374 | 0.68 | 0.81 | 31 | empty |
| 4 | 208 | 0.56 | 0.79 | 23 | empty |
| 5 | 248 | 0.52 | 0.75 | 39 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 5AZA · Crystal structure of MBP-sAglB fusion protein with a 20-residue spacer in the connector… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AEX9
- Every structure of UniProt I6V0B8
- Elsewhere: RCSB PDB 5AZA · PDBe 5AZA · UniProt P0AEX9 · UniProt I6V0B8
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.