MolNFT v1 · #113965 · protein

Crystal structure of cypovirus polyhedra R13K mutant

5AXV · Polyhedrin: “Crystal structure of cypovirus polyhedra R13K mutant”. X-ray diffraction, 3 ligands (ACE, CTP, CL), 2 pockets (best druggability 0.52). MolNFT v1 #113965 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5AXV
Type: protein
Length: 247 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polyhedrin
UniProt: P11041
Ligands: ACE, CTP, CL
Pockets: 2 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Polyhedrin	protein	247	25% helix, 29% strand	P11041

Ligands and binding sites

ACE · Acetyl group · ligand · chains A
CTP · Cytidine-5'-triphosphate · ligand · chains A
CL · Chloride ion · ion · chains A
EDO · 1,2-ethanediol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	158	0.52	0.79	23	EDO
2	50	0.25	0.74	12	empty

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

5AXV · Crystal Structure of Cypovirus Polyhedra R13K Mutant · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P11041
Elsewhere: RCSB PDB 5AXV · PDBe 5AXV · UniProt P11041

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