MolNFT v1 · #11388 · protein
Novel molecular architecture of yopm-a leucine-rich effector protein from yersinia pestis
1JL5 · Outer protein yopm: “Novel molecular architecture of yopm-a leucine-rich effector protein from yersinia pestis”. X-ray diffraction, 1 ligand (CA). MolNFT v1 #11388 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1JL5
- Type
- protein
- Length
- 353 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer protein yopm
- UniProt
- P17778
- Ligands
- CA
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Outer protein yopm | protein | 353 | 8% helix, 15% strand | P17778 |
Ligands and binding sites
- CA · Calcium ion · metal · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 1JL5 · Novel Molecular Architecture of YopM-a Leucine-rich Effector Protein from Yersinia pestis · the same entry in another collection · chain A against A, TM-score 1.00
- P17778 · AlphaFold monomer V2.0 prediction for outer membrane protein yopm (P17778) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P17778
- Elsewhere: RCSB PDB 1JL5 · PDBe 1JL5 · UniProt P17778
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