MolNFT v1 · #11376 · protein
Tetragonal crystal form of a catalytic domain of death-associated protein kinase
1JKT: “Tetragonal crystal form of a catalytic domain of death-associated protein kinase”. X-ray diffraction, 7 pockets (best druggability 0.76). MolNFT v1 #11376 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1JKT
- Type
- protein
- Length
- 552 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Death-associated protein kinase
- EC
- 2.7.1.-
- UniProt
- P53355
- Pockets
- 7 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Death-associated protein kinase (EC 2.7.1.-) | protein | 276 | 31% helix, 14% strand | P53355 |
Pockets
7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 799 | 0.76 | 0.80 | 72 | empty |
| 2 | 506 | 0.70 | 0.80 | 48 | empty |
| 3 | 81 | 0.69 | 0.94 | 19 | empty |
| 4 | 119 | 0.60 | 0.85 | 23 | empty |
| 5 | 62 | 0.59 | 0.90 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 730 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 1JKT · Tetragonal crystal form of a catalytic domain of death-associated protein kinase · the same entry in another collection · chain A against A, TM-score 1.00
- P53355 · AlphaFold monomer V2.0 prediction for death-associated protein kinase 1 (P53355) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53355
- Elsewhere: RCSB PDB 1JKT · PDBe 1JKT · UniProt P53355
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