MolNFT v1 · #113486 · protein

BCL-2 alpha beta-1 complex

5AGW · Apoptosis regulator BCL-2, BCL-2-like protein 1, apoptosis…: “BCL-2 alpha beta-1 complex”. X-ray diffraction, 1 ligand (ACE), 5 pockets (best druggability 0.53). MolNFT v1 #113486 on GenesisL1: 3D structure, binding sites and…

PDB: 5AGW
Type: protein
Length: 316 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Apoptosis regulator BCL-2, BCL-2-like protein 1, apoptosis regulator BCL-2; BCL-2-like…
UniProt: P10415, Q07817, O43521
Ligands: ACE
Pockets: 5 · best druggability 0.53

Structure

x-ray diffraction · 4 distinct chains · 76% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Apoptosis regulator BCL-2, BCL-2-like protein 1, apoptosis regulator BCL-2	protein	139	74% helix, 0% strand	P10415, Q07817
B	Apoptosis regulator BCL-2, BCL-2-like protein 1, apoptosis regulator BCL-2	protein	137	77% helix, 0% strand	P10415, Q07817
C	BCL-2-like protein 11	protein	19	84% helix, 0% strand	O43521
D	BCL-2-like protein 11	protein	21	76% helix, 0% strand	O43521

Ligands and binding sites

ACE · Acetyl group · ligand · 2 copies · chains B, C, A, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	186	0.53	0.78	24	empty
2	121	0.50	0.80	18	empty
3	104	0.48	0.81	24	empty
4	114	0.45	0.78	15	empty
5	86	0.36	0.75	14	empty

Interfaces

6 interfaces between chains.

B–C · 989 Å² buried · 9 hydrogen bonds · protein-protein
A–D · 944 Å² buried · 10 hydrogen bonds · protein-protein
C–D · 246 Å² buried · 0 hydrogen bonds · protein-protein
A–B · 210 Å² buried · 4 hydrogen bonds · protein-protein
A–C · 25 Å² buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 10 modified, 2 covalent (nonstandard, covalent ligand).

Compared structures

5AGW · Bcl-2 alpha beta-1 complex · the same entry in another collection · chain A against A, TM-score 1.00
P10415 · AlphaFold monomer V2.0 prediction for apoptosis regulator BCL-2 (P10415) · a predicted model of the same protein · chain A against A, TM-score 0.97
Q07817 · AlphaFold monomer V2.0 prediction for BCL-2-like protein 1 (Q07817) · a predicted model of the same protein · chain B against A, TM-score 0.96
O43521 · AlphaFold monomer V2.0 prediction for BCL-2-like protein 11 (O43521) · a predicted model of the same protein · chain C against A, TM-score 0.66

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P10415
Every structure of UniProt Q07817
Every structure of UniProt O43521
Elsewhere: RCSB PDB 5AGW · PDBe 5AGW · UniProt P10415 · UniProt Q07817 · UniProt O43521

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.