GL1X · GenesisL1 explorer

MolNFT v1 · #113310 · protein

Crystal structure analysis of fungal versatile peroxidase from pleurotus eryngii. mutant vpi-br. mutated residues T2K, D69S, T70D, S86E, A131K, D146T, Q202L, Q219K, H232E, Q239R, L288R, S301K, A308R, A309K and A314R.

5ABO · Versatile peroxidase VPL2: “Crystal structure analysis of fungal versatile peroxidase from pleurotus eryngii. mutant vpi-br. mutated…”. X-ray diffraction, 2 ligands (HEM, CA), 1 pocket (best druggability 0.81). MolNFT v1 #113310 on…

PDB
5ABO
Type
protein
Length
315 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Versatile peroxidase VPL2
EC
1.11.1.16
UniProt
O94753
Ligands
HEM, CA
Pockets
1 · best druggability 0.81

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 6% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AVersatile peroxidase VPL2 (EC 1.11.1.16)protein31543% helix, 6% strandO94753

Ligands and binding sites

  • HEM · Protoporphyrin IX containing Fe · ligand · chains A
  • CA · Calcium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
14630.810.8847HEM

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

  • 5ABO · CRYSTAL STRUCTURE ANALYSIS OF FUNGAL VERSATILE PEROXIDASE FROM PLEUROTUS ERYNGII. MUTANT… · the same entry in another collection · chain A against A, TM-score 1.00
  • O94753 · AlphaFold monomer V2.0 prediction for versatile peroxidase VPL2 (O94753) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.