MolNFT v1 · #11313 · protein
T4 phage bgt in complex with MG2+ : form II
1JIV · DNA beta-glucosyltransferase: “T4 phage bgt in complex with MG2+ : form II”. X-ray diffraction, 2 ligands (UDP, MG), 3 pockets (best druggability 0.76). MolNFT v1 #11313 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1JIV
- Type
- protein
- Length
- 351 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA beta-glucosyltransferase
- EC
- 2.4.1.27
- UniProt
- P04547
- Ligands
- UDP, MG
- Pockets
- 3 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA beta-glucosyltransferase (EC 2.4.1.27) | protein | 351 | 38% helix, 17% strand | P04547 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 502 | 0.76 | 0.84 | 45 | MG, UDP |
| 2 | 168 | 0.55 | 0.80 | 24 | empty |
| 3 | 117 | 0.43 | 0.77 | 22 | empty |
Compared structures
- 1JIV · T4 phage BGT in complex with Mg2+ : Form II · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04547
- Elsewhere: RCSB PDB 1JIV · PDBe 1JIV · UniProt P04547
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