MolNFT v1 · #113091 · protein
The crystal structure of arabidopsis thaliana CAR4 in complex with two calcium ions, zn and phopho choline
5A50 · AT3G17980: “The crystal structure of arabidopsis thaliana CAR4 in complex with two calcium ions, zn and phopho choline”. X-ray diffraction, 3 ligands (PC, CA, ZN), 2 pockets (best druggability 0.59). MolNFT v1 #113091 on GenesisL1…
- PDB
- 5A50
- Type
- protein
- Length
- 330 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AT3G17980
- UniProt
- Q9LVH4
- Ligands
- PC, CA, ZN
- Pockets
- 2 · best druggability 0.59
Structure
x-ray diffraction · 2 distinct chains · 4% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | AT3G17980 | protein | 165 | 4% helix, 48% strand | Q9LVH4 |
| B | AT3G17980 | protein | 165 | 4% helix, 50% strand | Q9LVH4 |
Ligands and binding sites
- PC · Phosphocholine · ligand · 2 copies · chains B
- CA · Calcium ion · metal · 4 copies · chains A, B
- ZN · Zinc ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 360 | 0.59 | 0.76 | 37 | empty |
| 2 | 264 | 0.54 | 0.76 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 593 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5A50 · The crystal structure of Arabidopsis thaliana CAR4 in complex with two calcium ions, Zn… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9LVH4 · AlphaFold monomer V2.0 prediction for protein C2-domain aba-related 4 (Q9LVH4) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LVH4
- Elsewhere: RCSB PDB 5A50 · PDBe 5A50 · UniProt Q9LVH4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.