MolNFT v1 · #112879 · protein
Crystal structure of human integral membrane stearoyl-CoA desaturase with substrate
4ZYO · Acyl-CoA desaturase: “Crystal structure of human integral membrane stearoyl-CoA desaturase with substrate”. X-ray diffraction, 2 ligands (ST9, ZN), 2 pockets (best druggability 0.75). MolNFT v1 #112879 on GenesisL1: 3D structure…
- PDB
- 4ZYO
- Type
- protein
- Length
- 298 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Acyl-CoA desaturase
- EC
- 1.14.19.1
- UniProt
- O00767
- Ligands
- ST9, ZN
- Pockets
- 2 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 58% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Acyl-CoA desaturase (EC 1.14.19.1) | protein | 298 | 58% helix, 2% strand | O00767 |
Ligands and binding sites
- ST9 · Stearoyl-coenzyme A · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
- LMT · Dodecyl-beta-D-maltoside · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 502 | 0.75 | 0.83 | 73 | ST9 |
| 2 | 52 | 0.31 | 0.76 | 11 | empty |
Compared structures
- 4ZYO · Crystal Structure of Human Integral Membrane Stearoyl-CoA Desaturase with Substrate · the same entry in another collection · chain A against A, TM-score 1.00
- O00767 · AlphaFold monomer V2.0 prediction for stearoyl-CoA desaturase (O00767) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O00767
- Elsewhere: RCSB PDB 4ZYO · PDBe 4ZYO · UniProt O00767
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