MolNFT v1 · #112876 · protein
Crystal structure of response regulator RPA3017 in red light signaling of R. palustris
4ZYL · Rphyb protein: “Crystal structure of response regulator RPA3017 in red light signaling of R. palustris”. X-ray diffraction, 3 pockets (best druggability 0.66). MolNFT v1 #112876 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 4ZYL
- Type
- protein
- Length
- 287 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rphyb protein
- UniProt
- Q6N5G1
- Pockets
- 3 · best druggability 0.66
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rphyb protein | protein | 143 | 43% helix, 17% strand | Q6N5G1 |
| B | Rphyb protein | protein | 144 | 43% helix, 17% strand | Q6N5G1 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 97 | 0.66 | 0.91 | 24 | empty |
| 2 | 73 | 0.34 | 0.76 | 14 | empty |
| 3 | 63 | 0.31 | 0.75 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 1211 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 4ZYL · Crystal structure of response regulator RPA3017 in red light signaling of R. palustris · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6N5G1
- Elsewhere: RCSB PDB 4ZYL · PDBe 4ZYL · UniProt Q6N5G1
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