Research workbench
Crystal structure of response regulator RPA3017 in red light signaling of R. palustris
Analyse Crystal structure of response regulator RPA3017 in red light signaling of R.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ZYL
- Type
- protein
- Length
- 287 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rphyb protein
- UniProt
- Q6N5G1
- Pockets
- 3 · best druggability 0.66
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rphyb protein | protein | 143 | 43% helix, 17% strand | Q6N5G1 |
| B | Rphyb protein | protein | 144 | 43% helix, 17% strand | Q6N5G1 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 97 | 0.66 | 0.91 | 24 | empty |
| 2 | 73 | 0.34 | 0.76 | 14 | empty |
| 3 | 63 | 0.31 | 0.75 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 1211 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 4ZYL · Crystal structure of response regulator RPA3017 in red light signaling of R. palustris · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6N5G1
- Elsewhere: RCSB PDB 4ZYL · PDBe 4ZYL · UniProt Q6N5G1
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