MolNFT v1 · #112311 · protein

EG5 motor domain mutant E162S

4ZHI · Kinesin-like protein KIF11: “EG5 motor domain mutant E162S”. X-ray diffraction, 1 ligand (ADP), 8 pockets (best druggability 0.66). MolNFT v1 #112311 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4ZHI
Type: protein
Length: 660 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Kinesin-like protein KIF11
UniProt: P52732
Ligands: ADP
Pockets: 8 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Kinesin-like protein KIF11	protein	330	32% helix, 27% strand	P52732

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	605	0.66	0.76	80	ADP
2	145	0.51	0.79	24	empty
3	166	0.51	0.78	26	empty
4	225	0.50	0.76	31	empty
5	121	0.47	0.79	21	empty

Interfaces

1 interface between chains.

A–B · 379 Å² buried · 2 hydrogen bonds · protein-protein

Compared structures

4ZHI · Eg5 motor domain mutant E162S · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P52732
Elsewhere: RCSB PDB 4ZHI · PDBe 4ZHI · UniProt P52732

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