MolNFT v1 · #112200 · protein
Saccharomyces cerevisiae CYP51 (lanosterol 14-alpha demethylase) Y140H mutant complexed with itraconazole
4ZE2: “Saccharomyces cerevisiae CYP51 (lanosterol 14-alpha demethylase) Y140H mutant complexed with itraconazole”. X-ray diffraction, 2 ligands (HEM, 1YN), 5 pockets (best druggability 0.87). MolNFT v1 #112200 on GenesisL1: 3D structure…
- PDB
- 4ZE2
- Type
- protein
- Length
- 529 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lanosterol 14-alpha demethylase
- UniProt
- A6ZSR0
- Ligands
- HEM, 1YN
- Pockets
- 5 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lanosterol 14-alpha demethylase | protein | 529 | 52% helix, 10% strand | A6ZSR0 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- 1YN · 2-[(2R)-butan-2-yl]-4-{4-[4-(4-{[(2R,4S)-2-(2,4-dichlorophenyl)-2-(1H-1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy}phenyl)piperazin-1-yl]phenyl}-2,4-dihydro-3H-1,2,4-triazol-3-one · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 938 | 0.87 | 0.88 | 80 | HEM, 1YN |
| 2 | 256 | 0.59 | 0.79 | 32 | empty |
| 3 | 188 | 0.56 | 0.80 | 36 | empty |
| 4 | 140 | 0.46 | 0.77 | 27 | empty |
| 5 | 51 | 0.34 | 0.78 | 16 | empty |
Compared structures
- 4ZE2 · Saccharomyces cerevisiae CYP51 (Lanosterol 14-alpha demethylase) Y140H mutant complexed… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6ZSR0
- Elsewhere: RCSB PDB 4ZE2 · PDBe 4ZE2 · UniProt A6ZSR0
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