MolNFT v1 · #112146 · protein

EG5 motor domain mutant Y231F

4ZCA · Kinesin-like protein KIF11: “EG5 motor domain mutant Y231F”. X-ray diffraction, 2 ligands (ADP, MG), 6 pockets (best druggability 0.80). MolNFT v1 #112146 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4ZCA
Type: protein
Length: 663 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Kinesin-like protein KIF11
UniProt: P52732
Ligands: ADP, MG
Pockets: 6 · best druggability 0.80

Structure

x-ray diffraction · 2 distinct chains · 34% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Kinesin-like protein KIF11	protein	334	34% helix, 27% strand	P52732
B	Kinesin-like protein KIF11	protein	329	34% helix, 29% strand	P52732

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, B
MG · Magnesium ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	914	0.80	0.83	97	ADP, MG
2	84	0.53	0.85	15	empty
3	196	0.53	0.78	24	empty
4	171	0.50	0.78	27	empty
5	140	0.46	0.77	27	empty

Interfaces

1 interface between chains.

A–B · 1135 Å² buried · 21 hydrogen bonds · protein-protein

Compared structures

4ZCA · Eg5 motor domain mutant Y231F · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P52732
Elsewhere: RCSB PDB 4ZCA · PDBe 4ZCA · UniProt P52732

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.