MolNFT v1 · #11201 · protein
Minimum energy representative structure of a calcium bound ef-hand protein from entamoeba histolytica
1JFK · Calcium-binding protein: “Minimum energy representative structure of a calcium bound ef-hand protein from entamoeba histolytica”. Solution nmr, 1 ligand (CA), 2 pockets (best druggability 0.76). MolNFT v1 #11201 on GenesisL1: 3D…
- PDB
- 1JFK
- Type
- protein
- Length
- 134 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Calcium-binding protein
- UniProt
- P38505
- Ligands
- CA
- Pockets
- 2 · best druggability 0.76
Structure
solution nmr · 1 distinct chain · 57% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Calcium-binding protein | protein | 134 | 57% helix, 9% strand | P38505 |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 543 | 0.76 | 0.83 | 53 | empty |
| 2 | 87 | 0.43 | 0.79 | 15 | empty |
Compared structures
- 1JFK · Minimum energy representative structure of a calcium bound ef-hand protein from entamoeba… · the same entry in another collection · chain A against A, TM-score 1.00
- P38505 · AlphaFold monomer V2.0 prediction for calcium-binding protein (P38505) · a predicted model of the same protein · chain A against A, TM-score 0.46
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38505
- Elsewhere: RCSB PDB 1JFK · PDBe 1JFK · UniProt P38505
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.