MolNFT v1 · #111940 · protein

The 2.5-ångström of crystal structure of ZN(2+)-bound pqqb from pseudomonas putida

4Z60 · Coenzyme pqq synthesis protein B: “The 2.5-ångström of crystal structure of ZN(2+)-bound pqqb from pseudomonas putida”. X-ray diffraction, 1 ligand (ZN), 2 pockets (best druggability 0.63). MolNFT v1 #111940 on GenesisL1: 3D…

PDB: 4Z60
Type: protein
Length: 308 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Coenzyme pqq synthesis protein B
UniProt: Q88QV5
Ligands: ZN
Pockets: 2 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 22% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Coenzyme pqq synthesis protein B	protein	308	22% helix, 24% strand	Q88QV5

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	349	0.63	0.79	54	empty
2	109	0.36	0.74	16	empty

Compared structures

4Z60 · The 2.5-angstrom of crystal structure of Zn(2+)-bound PqqB from Pseudomonas Putida · the same entry in another collection · chain A against A, TM-score 1.00
Q88QV5 · AlphaFold monomer V2.0 prediction for coenzyme pqq synthesis protein B (Q88QV5) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q88QV5
Elsewhere: RCSB PDB 4Z60 · PDBe 4Z60 · UniProt Q88QV5

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