MolNFT v1 · #111791 · protein
Structure of apo form KDO8PS from H.PYLORI
4Z1A · 2-dehydro-3-deoxyphosphooctonate aldolase: “Structure of apo form KDO8PS from H.PYLORI”. X-ray diffraction, 3 pockets (best druggability 0.75). MolNFT v1 #111791 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4Z1A
- Type
- protein
- Length
- 520 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 2-dehydro-3-deoxyphosphooctonate aldolase
- EC
- 2.5.1.55
- UniProt
- P56060
- Pockets
- 3 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55) | protein | 260 | 41% helix, 18% strand | P56060 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 525 | 0.75 | 0.83 | 55 | empty |
| 2 | 532 | 0.75 | 0.83 | 44 | empty |
| 3 | 255 | 0.65 | 0.83 | 38 | empty |
Interfaces
1 interface between chains.
- A–B · 1437 Ų buried · 23 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P56060
- Elsewhere: RCSB PDB 4Z1A · PDBe 4Z1A · UniProt P56060
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