MolNFT v1 · #111751 · protein
C. bescii family 3 pectate lyase mutant E84A
4Z05: “C. bescii family 3 pectate lyase mutant E84A”. X-ray diffraction, 2 ligands (CA, CL). MolNFT v1 #111751 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4Z05
- Type
- protein
- Length
- 392 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pectate lyase
- EC
- 4.2.2.2
- UniProt
- B9MKT4
- Ligands
- CA, CL
Structure
x-ray diffraction · 1 distinct chain · 2% helix, 60% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Pectate lyase (EC 4.2.2.2) | protein | 196 | 2% helix, 60% strand | B9MKT4 |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A, B
- CL · Chloride ion · ion · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 6 copies · chains A, B
- MRD · (4R)-2-methylpentane-2,4-diol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 522 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
- 4Z05 · C. bescii Family 3 pectate lyase mutant E84A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B9MKT4
- Elsewhere: RCSB PDB 4Z05 · PDBe 4Z05 · UniProt B9MKT4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.