MolNFT v1 · #11172 · protein
Crystal structure of the ku heterodimer
1JEQ · KU70: “Crystal structure of the ku heterodimer”. X-ray diffraction, 16 pockets (best druggability 0.74). MolNFT v1 #11172 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1JEQ
- Type
- protein
- Length
- 1,068 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- KU70; KU80
- UniProt
- P12956, P13010
- Pockets
- 16 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | KU70 | protein | 548 | 36% helix, 23% strand | P12956 |
| B | KU80 | protein | 520 | 34% helix, 26% strand | P13010 |
Pockets
16 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 963 | 0.74 | 0.77 | 81 | empty |
| 2 | 212 | 0.73 | 0.89 | 35 | empty |
| 3 | 547 | 0.70 | 0.79 | 60 | empty |
| 4 | 168 | 0.68 | 0.87 | 25 | empty |
| 5 | 276 | 0.55 | 0.76 | 39 | empty |
Interfaces
1 interface between chains.
- A–B · 9911 Ų buried · 109 hydrogen bonds · protein-protein
Compared structures
- 1JEQ · Crystal Structure of the Ku Heterodimer · the same entry in another collection · chain A against A, TM-score 1.00
- P13010 · AlphaFold monomer V2.0 prediction for X-ray repair cross- complementing protein 5 (P13010) · a predicted model of the same protein · chain B against A, TM-score 0.99
- P12956 · AlphaFold monomer V2.0 prediction for X-ray repair cross- complementing protein 6 (P12956) · a predicted model of the same protein · chain A against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12956
- Every structure of UniProt P13010
- Elsewhere: RCSB PDB 1JEQ · PDBe 1JEQ · UniProt P12956 · UniProt P13010
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