MolNFT v1 · #11153 · protein

Crystal structure of GP2.5, a single-stranded DNA binding protein encoded by bacteriophage T7

1JE5 · Helix-destabilizing protein: “Crystal structure of GP2.5, a single-stranded DNA binding protein encoded by bacteriophage T7”. X-ray diffraction, 1 ligand (CA), 2 pockets (best druggability 0.81). MolNFT v1 #11153 on GenesisL1: 3D…

PDB: 1JE5
Type: protein
Length: 363 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Helix-destabilizing protein
UniProt: P03696
Ligands: CA
Pockets: 2 · best druggability 0.81

Structure

x-ray diffraction · 2 distinct chains · 17% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Helix-destabilizing protein	protein	181	16% helix, 37% strand	P03696
B	Helix-destabilizing protein	protein	182	17% helix, 37% strand	P03696

Ligands and binding sites

CA · Calcium ion · metal · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1046	0.81	0.82	91	empty
2	112	0.41	0.76	23	empty

Interfaces

1 interface between chains.

A–B · 1225 Å² buried · 15 hydrogen bonds · protein-protein

Compared structures

1JE5 · Crystal Structure of gp2.5, a Single-Stranded DNA Binding Protein Encoded by… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03696
Elsewhere: RCSB PDB 1JE5 · PDBe 1JE5 · UniProt P03696

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