MolNFT v1 · #111353 · protein

Crystal structure of a thioredoxin-like protein (BACCAC_02376) from bacteroides caccae atcc 43185 at 1.90 a resolution

4YOD: “Crystal structure of a thioredoxin-like protein (BACCAC_02376) from bacteroides caccae atcc 43185 at 1.90 a…”. X-ray diffraction, 2 pockets (best druggability 0.55). MolNFT v1 #111353 on GenesisL1: 3D structure, binding sites and…

PDB: 4YOD
Type: protein
Length: 277 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Thioredoxin-like protein
UniProt: A5ZHK4
Pockets: 2 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 49% helix, 12% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Thioredoxin-like protein	protein	277	49% helix, 12% strand	A5ZHK4

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	197	0.55	0.79	25	empty
2	53	0.29	0.75	15	empty

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

4YOD · Crystal structure of a thioredoxin-like protein (BACCAC_02376) from Bacteroides caccae… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A5ZHK4
Elsewhere: RCSB PDB 4YOD · PDBe 4YOD · UniProt A5ZHK4

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