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Crystal structure of a thioredoxin-like protein (BACCAC_02376) from bacteroides caccae atcc 43185 at 1.90 a resolution
Analyse Crystal structure of a thioredoxin-like protein (BACCAC_02376) from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4YOD
- Type
- protein
- Length
- 277 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thioredoxin-like protein
- UniProt
- A5ZHK4
- Pockets
- 2 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thioredoxin-like protein | protein | 277 | 49% helix, 12% strand | A5ZHK4 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 197 | 0.55 | 0.79 | 25 | empty |
| 2 | 53 | 0.29 | 0.75 | 15 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 4YOD · Crystal structure of a thioredoxin-like protein (BACCAC_02376) from Bacteroides caccae… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5ZHK4
- Elsewhere: RCSB PDB 4YOD · PDBe 4YOD · UniProt A5ZHK4
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