MolNFT v1 · #111198 · protein

The kinase domain of human spleen tyrosine (syk) in complex with GTC000233

4YJT · Tyrosine-protein kinase syk: “The kinase domain of human spleen tyrosine (syk) in complex with GTC000233”. X-ray diffraction, 1 ligand (4DQ), 2 pockets (best druggability 0.65). MolNFT v1 #111198 on GenesisL1: 3D structure, binding…

PDB: 4YJT
Type: protein
Length: 270 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tyrosine-protein kinase syk
EC: 2.7.10.2
UniProt: P43405
Ligands: 4DQ
Pockets: 2 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tyrosine-protein kinase syk (EC 2.7.10.2)	protein	270	37% helix, 21% strand	P43405

Ligands and binding sites

4DQ · N~2~-(1,1-dioxido-2,3-dihydro-1,2-benzothiazol-6-yl)-N~4~-ethyl-5-fluoro-N~4~-(1H-indazol-4-yl)pyrimidine-2,4-diamine · ligand · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	374	0.65	0.79	32	4DQ
2	68	0.33	0.76	20	empty

Modifications

Observed in the structure: 2 modified (phosphorylation).

Compared structures

4YJT · The kinase domain of human spleen tyrosine (syk) in complex with GTC000233 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P43405
Elsewhere: RCSB PDB 4YJT · PDBe 4YJT · UniProt P43405

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