MolNFT v1 · #110990 · protein

Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human cellular retinoic acid binding protein II in complex with retinal at 2.03 ångström -UV irradiated crystal- 3RD cycle

4YDB · Cellular retinoic acid-binding protein 2: “Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human cellular retinoic acid binding…”. X-ray diffraction, 1 ligand (RET), 1 pocket (best druggability 0.70). MolNFT v1…

PDB: 4YDB
Type: protein
Length: 137 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cellular retinoic acid-binding protein 2
UniProt: P29373
Ligands: RET
Pockets: 1 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 13% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cellular retinoic acid-binding protein 2	protein	137	13% helix, 55% strand	P29373

Ligands and binding sites

RET · Retinal · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	390	0.70	0.82	37	RET

Modifications

Observed in the structure: 1 cofactor (retinal Schiff base).

Compared structures

4YDB · Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human Cellular… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P29373
Elsewhere: RCSB PDB 4YDB · PDBe 4YDB · UniProt P29373

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