MolNFT v1 · #110778 · protein

Structure of tobacco streak virus coat protein at 2.1 ångströms resolution (C2 crystal form)

4Y6X: “Structure of tobacco streak virus coat protein at 2.1 ångströms resolution (C2 crystal form)”. X-ray diffraction, 2 pockets (best druggability 0.51). MolNFT v1 #110778 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4Y6X
Type: protein
Length: 433 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Coat protein
UniProt: A7UMQ4
Pockets: 2 · best druggability 0.51

Structure

x-ray diffraction · 3 distinct chains · 8% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Coat protein	protein	144	9% helix, 39% strand	A7UMQ4
B	Coat protein	protein	145	6% helix, 39% strand	A7UMQ4
C	Coat protein	protein	144	9% helix, 39% strand	A7UMQ4

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	263	0.51	0.75	34	empty
2	189	0.47	0.75	35	empty

Interfaces

2 interfaces between chains.

A–B · 407 Å² buried · 3 hydrogen bonds · protein-protein
B–C · 302 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

4Y6X · Structure of Tobacco streak virus coat protein at 2.1 Angstroms resolution (C2 crystal… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7UMQ4
Elsewhere: RCSB PDB 4Y6X · PDBe 4Y6X · UniProt A7UMQ4

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