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Structure of tobacco streak virus coat protein at 2.1 ångströms resolution (C2 crystal form)

Analyse Structure of tobacco streak virus coat protein at 2.1 ångströms resolution (C2… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4Y6X
Type: protein
Length: 433 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Coat protein
UniProt: A7UMQ4
Pockets: 2 · best druggability 0.51

Structure

x-ray diffraction · 3 distinct chains · 8% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Coat protein	protein	144	9% helix, 39% strand	A7UMQ4
B	Coat protein	protein	145	6% helix, 39% strand	A7UMQ4
C	Coat protein	protein	144	9% helix, 39% strand	A7UMQ4

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	263	0.51	0.75	34	empty
2	189	0.47	0.75	35	empty

Interfaces

2 interfaces between chains.

A–B · 407 Å² buried · 3 hydrogen bonds · protein-protein
B–C · 302 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

4Y6X · Structure of Tobacco streak virus coat protein at 2.1 Angstroms resolution (C2 crystal… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7UMQ4
Elsewhere: RCSB PDB 4Y6X · PDBe 4Y6X · UniProt A7UMQ4

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