MolNFT v1 · #110369 · protein

Crystal structure of M. chilensis MG662 protein complexed with GTP

4XUL: “Crystal structure of M. chilensis MG662 protein complexed with GTP”. X-ray diffraction, 3 ligands (GTP, MG, NA), 3 pockets (best druggability 0.71). MolNFT v1 #110369 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4XUL
Type: protein
Length: 365 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MG662
UniProt: G5CQN7
Ligands: GTP, MG, NA
Pockets: 3 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 56% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MG662	protein	365	56% helix, 15% strand	G5CQN7

Ligands and binding sites

GTP · Guanosine-5'-triphosphate · ligand · chains A
MG · Magnesium ion · metal · 2 copies · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	815	0.71	0.77	57	MG, GTP
2	86	0.39	0.77	17	empty
3	77	0.35	0.75	16	empty

Compared structures

4XUL · Crystal structure of M. chilensis Mg662 protein complexed with GTP · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G5CQN7
Elsewhere: RCSB PDB 4XUL · PDBe 4XUL · UniProt G5CQN7

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