MolNFT v1 · #110072 · protein
Toxoplasma gondii dj-1, oxidized
4XLL · Dj-1 family protein: “Toxoplasma gondii dj-1, oxidized”. X-ray diffraction, 2 pockets (best druggability 0.44). MolNFT v1 #110072 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4XLL
- Type
- protein
- Length
- 368 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dj-1 family protein
- UniProt
- B9PZH8
- Pockets
- 2 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Dj-1 family protein | protein | 184 | 42% helix, 21% strand | B9PZH8 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 92 | 0.44 | 0.79 | 24 | empty |
| 2 | 53 | 0.29 | 0.75 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 1313 Ų buried · 26 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (oxidation).
Compared structures
- 4XLL · Toxoplasma gondii DJ-1, oxidized · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B9PZH8
- Elsewhere: RCSB PDB 4XLL · PDBe 4XLL · UniProt B9PZH8
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