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Toxoplasma gondii dj-1, oxidized

Analyse Toxoplasma gondii dj-1, oxidized in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4XLL
Type: protein
Length: 368 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dj-1 family protein
UniProt: B9PZH8
Pockets: 2 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Dj-1 family protein	protein	184	42% helix, 21% strand	B9PZH8

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	92	0.44	0.79	24	empty
2	53	0.29	0.75	12	empty

Interfaces

1 interface between chains.

A–B · 1313 Å² buried · 26 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 modified (oxidation).

Compared structures

4XLL · Toxoplasma gondii DJ-1, oxidized · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B9PZH8
Elsewhere: RCSB PDB 4XLL · PDBe 4XLL · UniProt B9PZH8

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