MolNFT v1 · #109810 · protein

Crystal structure of a glycoside hydrolase family protein (RV0315 ortholog) from mycobacterium thermorestibile

4XDQ: “Crystal structure of a glycoside hydrolase family protein (RV0315 ortholog) from mycobacterium thermorestibile”. X-ray diffraction, 5 ligands (BEZ, CA, CD), 1 pocket (best druggability 0.57). MolNFT v1 #109810 on GenesisL1: 3D…

PDB: 4XDQ
Type: protein
Length: 237 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glycoside hydrolase family protein
UniProt: G7CI90
Ligands: BEZ, CA, CD, MG, CL
Pockets: 1 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glycoside hydrolase family protein	protein	237	8% helix, 43% strand	G7CI90

Ligands and binding sites

BEZ · Benzoic acid · ligand · chains A
CA · Calcium ion · metal · chains A
CD · Cadmium ion · metal · chains A
MG · Magnesium ion · metal · chains A
CL · Chloride ion · ion · 2 copies · chains A
EDO · 1,2-ethanediol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	336	0.57	0.75	36	EDO

Compared structures

4XDQ · Crystal structure of a Glycoside hydrolase family protein (Rv0315 ortholog) from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G7CI90
Elsewhere: RCSB PDB 4XDQ · PDBe 4XDQ · UniProt G7CI90

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