MolNFT v1 · #109776 · protein

Clostridium botulinum phage C-st tubz (C-terminal tail truncated protein)

4XCQ: “Clostridium botulinum phage C-st tubz (C-terminal tail truncated protein)”. X-ray diffraction, 2 ligands (GDP, NA), 3 pockets (best druggability 0.51). MolNFT v1 #109776 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4XCQ
Type: protein
Length: 303 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tubz
UniProt: Q331T7
Ligands: GDP, NA
Pockets: 3 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tubz	protein	303	45% helix, 21% strand	Q331T7

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	168	0.51	0.78	32	GDP
2	59	0.38	0.79	16	empty
3	63	0.36	0.78	18	empty

Compared structures

4XCQ · Clostridium botulinum phage c-st TubZ (C-terminal tail truncated protein) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q331T7
Elsewhere: RCSB PDB 4XCQ · PDBe 4XCQ · UniProt Q331T7

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