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MolNFT v1 · #109599 · protein

Co-crystal structure of perk bound to 1-[5-(4-amino-2,7-dimethyl-7H- PYRROLO[2,3-D]PYRIMIDIN-5-yl)-2,3-dihydro-1H-indol-1-yl]-2-[3-fluoro- 5-(TRIFLUOROMETHYL)PHENYL]ETHANONE inhibitor

4X7O · Eukaryotic translation initiation factor 2-alpha kinase 3…: “Co-crystal structure of perk bound to 1-[5-(4-amino-2,7-dimethyl-7H…”. X-ray diffraction, 1 ligand (3Z6), 1 pocket (best druggability 0.73). MolNFT v1 #109599 on…

PDB
4X7O
Type
protein
Length
246 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Eukaryotic translation initiation factor 2-alpha kinase 3, eukaryotic translation…
EC
2.7.11.1
UniProt
Q9NZJ5
Ligands
3Z6
Pockets
1 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 18% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AEukaryotic translation initiation factor 2-alpha kinase 3, eukaryotic translation initiation factor 2-alpha kinase 3 (EC 2.7.11.1)protein24642% helix, 18% strandQ9NZJ5

Ligands and binding sites

  • 3Z6 · 1-[5-(4-amino-2,7-dimethyl-7H-pyrrolo[2,3-d]pyrimidin-5-yl)-2,3-dihydro-1H-indol-1-yl]-2-[3-fluoro-5-(trifluoromethyl)phenyl]ethanone · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
13610.730.84373Z6

Compared structures

  • 4X7O · Co-crystal Structure of PERK bound to 1-[5-(4-amino-2,7-dimethyl-7H-pyrrolo[2,3-d]pyrimidi… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9NZJ5 · AlphaFold monomer V2.0 prediction for eukaryotic translation initiation factor 2-alpha… · a predicted model of the same protein · chain A against A, TM-score 0.97

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