MolNFT v1 · #109406 · protein
The crystal structure of arabidopsis thaliana galactolipid synthase MGD1 in complex with udp
4X1T · Monogalactosyldiacylglycerol synthase 1, chloroplastic: “The crystal structure of arabidopsis thaliana galactolipid synthase MGD1 in complex with udp”. X-ray diffraction, 1 ligand (UDP), 1 pocket (best druggability 0.67). MolNFT v1…
- PDB
- 4X1T
- Type
- protein
- Length
- 321 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Monogalactosyldiacylglycerol synthase 1, chloroplastic
- EC
- 2.4.1.46
- UniProt
- O81770
- Ligands
- UDP
- Pockets
- 1 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Monogalactosyldiacylglycerol synthase 1, chloroplastic (EC 2.4.1.46) | protein | 321 | 40% helix, 17% strand | O81770 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · chains A
- EDO · 1,2-ethanediol · additive · 9 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 362 | 0.67 | 0.81 | 47 | UDP |
Compared structures
- 4X1T · The crystal structure of Arabidopsis thaliana galactolipid synthase MGD1 in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- O81770 · AlphaFold monomer V2.0 prediction for monogalactosyldiacylglycerol synthase 1… · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O81770
- Elsewhere: RCSB PDB 4X1T · PDBe 4X1T · UniProt O81770
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.