MolNFT v1 · #109298 · protein
The crystal structure of arabidopsis thaliana galactolipid synthase, MGD1 (apo-form)
4WYI · Monogalactosyldiacylglycerol synthase 1, chloroplastic: “The crystal structure of arabidopsis thaliana galactolipid synthase, MGD1 (apo-form)”. X-ray diffraction, 2 pockets (best druggability 0.62). MolNFT v1 #109298 on GenesisL1…
- PDB
- 4WYI
- Type
- protein
- Length
- 336 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Monogalactosyldiacylglycerol synthase 1, chloroplastic
- EC
- 2.4.1.46
- UniProt
- O81770
- Pockets
- 2 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Monogalactosyldiacylglycerol synthase 1, chloroplastic (EC 2.4.1.46) | protein | 336 | 41% helix, 18% strand | O81770 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 381 | 0.62 | 0.78 | 45 | empty |
| 2 | 64 | 0.27 | 0.73 | 18 | empty |
Compared structures
- O81770 · AlphaFold monomer V2.0 prediction for monogalactosyldiacylglycerol synthase 1… · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O81770
- Elsewhere: RCSB PDB 4WYI · PDBe 4WYI · UniProt O81770
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