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The crystal structure of arabidopsis thaliana galactolipid synthase, MGD1 (apo-form)

Analyse The crystal structure of arabidopsis thaliana galactolipid synthase, MGD1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4WYI
Type: protein
Length: 336 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Monogalactosyldiacylglycerol synthase 1, chloroplastic
EC: 2.4.1.46
UniProt: O81770
Pockets: 2 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Monogalactosyldiacylglycerol synthase 1, chloroplastic (EC 2.4.1.46)	protein	336	41% helix, 18% strand	O81770

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	381	0.62	0.78	45	empty
2	64	0.27	0.73	18	empty

Compared structures

4WYI · The crystal structure of Arabidopsis thaliana galactolipid synthase, MGD1 (apo-form) · the same entry in another collection · chain A against A, TM-score 1.00
O81770 · AlphaFold monomer V2.0 prediction for monogalactosyldiacylglycerol synthase 1… · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O81770
Elsewhere: RCSB PDB 4WYI · PDBe 4WYI · UniProt O81770

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