MolNFT v1 · #109274 · protein
Crystal structure of the selenomthionine incorporated myocilin olfactomedin domain E396D variant.
4WXU: “Crystal structure of the selenomthionine incorporated myocilin olfactomedin domain E396D variant.”. X-ray diffraction, 2 ligands (CA, NA), 2 pockets (best druggability 0.31). MolNFT v1 #109274 on GenesisL1: 3D structure, binding…
- PDB
- 4WXU
- Type
- protein
- Length
- 259 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Myocilin
- UniProt
- Q99972
- Ligands
- CA, NA
- Pockets
- 2 · best druggability 0.31
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Myocilin | protein | 259 | 5% helix, 51% strand | Q99972 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
- NA · Sodium ion · metal · chains A
- P6G · Hexaethylene glycol · additive · 3 copies · chains A
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.31 | 0.76 | 18 | empty |
| 2 | 57 | 0.27 | 0.74 | 15 | empty |
Modifications
Observed in the structure: 4 modified, 1 disulfide (engineered, disulfide).
Compared structures
- 4WXU · Crystal Structure of the Selenomthionine Incorporated Myocilin Olfactomedin Domain E396D… · the same entry in another collection · chain A against A, TM-score 1.00
- Q99972 · AlphaFold monomer V2.0 prediction for myocilin (Q99972) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q99972
- Elsewhere: RCSB PDB 4WXU · PDBe 4WXU · UniProt Q99972
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