MolNFT v1 · #109234 · protein
Crystal structure of human PI3K-gamma in complex with (S)-N-(1-(7- fluoro-2-(pyridin-2-YL)QUINOLIN-3-YL)ETHYL)-9H-purin-6-amine AMG319 inhibitor
4WWN · Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic…: “Crystal structure of human PI3K-gamma in complex with (S)-N-(1-(7…”. X-ray diffraction, 2 ligands (3VC, SO4), 12 pockets (best druggability 0.82). MolNFT v1 #109234 on…
- PDB
- 4WWN
- Type
- protein
- Length
- 831 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform
- EC
- 2.7.1.153, 2.7.11.1
- UniProt
- P48736
- Ligands
- 3VC, SO4
- Pockets
- 12 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform (EC 2.7.1.153, 2.7.11.1) | protein | 831 | 45% helix, 18% strand | P48736 |
Ligands and binding sites
- 3VC · N-{(1S)-1-[7-fluoro-2-(pyridin-2-yl)quinolin-3-yl]ethyl}-9H-purin-6-amine · ligand · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
12 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1107 | 0.82 | 0.83 | 74 | empty |
| 2 | 268 | 0.67 | 0.83 | 33 | empty |
| 3 | 331 | 0.66 | 0.80 | 41 | 3VC |
| 4 | 172 | 0.57 | 0.81 | 26 | empty |
| 5 | 258 | 0.56 | 0.77 | 40 | empty |
Compared structures
- 4WWN · Crystal structure of human PI3K-gamma in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P48736
- Elsewhere: RCSB PDB 4WWN · PDBe 4WWN · UniProt P48736
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