MolNFT v1 · #109058 · protein
Crystal structure of a putative pyrimidine-specific ribonucleoside hydrolase (riha) protein from shewanella loihica pv-4 (SHEW_0697, target psi-029635) with divalent cation and peg 400 bound at the active site
4WR2 · Pyrimidine-specific ribonucleoside hydrolase riha: “Crystal structure of a putative pyrimidine-specific ribonucleoside hydrolase (riha) protein from shewanella…”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.66).…
- PDB
- 4WR2
- Type
- protein
- Length
- 308 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pyrimidine-specific ribonucleoside hydrolase riha
- EC
- 3.2.-.-
- UniProt
- A3QAS1
- Ligands
- CA
- Pockets
- 1 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pyrimidine-specific ribonucleoside hydrolase riha (EC 3.2.-.-) | protein | 308 | 39% helix, 19% strand | A3QAS1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 454 | 0.66 | 0.79 | 44 | 1PE |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 4WR2 · Crystal structure of a putative pyrimidine-specific ribonucleoside hydrolase (RihA)… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3QAS1
- Elsewhere: RCSB PDB 4WR2 · PDBe 4WR2 · UniProt A3QAS1
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