MolNFT v1 · #108945 · protein
Xenopus laevis embryonic epidermal lectin in complex with glycerol phosphate
4WN0 · Xeel protein: “Xenopus laevis embryonic epidermal lectin in complex with glycerol phosphate”. X-ray diffraction, 3 ligands (G3P, CA, PO4). MolNFT v1 #108945 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4WN0
- Type
- protein
- Length
- 277 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xeel protein
- UniProt
- Q5PPM0
- Ligands
- G3P, CA, PO4
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xeel protein | protein | 277 | 21% helix, 27% strand | Q5PPM0 |
Ligands and binding sites
- G3P · Sn-glycerol-3-phosphate · ligand · chains A
- CA · Calcium ion · metal · 3 copies · chains A
- PO4 · Phosphate ion · ion · chains A
- 1PE · Pentaethylene glycol · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 4WN0 · Xenopus laevis embryonic epidermal lectin in complex with glycerol phosphate · the same entry in another collection · chain A against A, TM-score 1.00
- Q5PPM0 · AlphaFold monomer V2.0 prediction for intelectin-1 (Q5PPM0) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5PPM0
- Elsewhere: RCSB PDB 4WN0 · PDBe 4WN0 · UniProt Q5PPM0
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