MolNFT v1 · #10880 · protein
The crystal structure of ca+-bound human S100P determined at 2.0A resolution by X-ray
1J55 · S-100P protein: “The crystal structure of ca+-bound human S100P determined at 2.0A resolution by X-ray”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.33). MolNFT v1 #10880 on GenesisL1: 3D structure, binding sites…
- PDB
- 1J55
- Type
- protein
- Length
- 88 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- S-100P protein
- UniProt
- P25815
- Ligands
- CA
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 66% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | S-100P protein | protein | 88 | 66% helix, 5% strand | P25815 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.33 | 0.76 | 11 | empty |
Compared structures
- 1J55 · The Crystal Structure of Ca+-bound Human S100P Determined at 2.0A Resolution by X-ray · the same entry in another collection · chain A against A, TM-score 1.00
- P25815 · AlphaFold monomer V2.0 prediction for protein S100-P (P25815) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P25815
- Elsewhere: RCSB PDB 1J55 · PDBe 1J55 · UniProt P25815
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