MolNFT v1 · #108624 · protein
Crystal structure of apo cell shape determinant protein CSD4 from helicobacter pylori
4WCK · Conserved hypothetical secreted protein: “Crystal structure of apo cell shape determinant protein CSD4 from helicobacter pylori”. X-ray diffraction, 2 ligands (API, IOD), 4 pockets (best druggability 0.55). MolNFT v1 #108624 on…
- PDB
- 4WCK
- Type
- protein
- Length
- 420 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Conserved hypothetical secreted protein
- UniProt
- B5ZAD9
- Ligands
- API, IOD
- Pockets
- 4 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Conserved hypothetical secreted protein | protein | 420 | 25% helix, 33% strand | B5ZAD9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 134 | 0.55 | 0.82 | 28 | IOD, API |
| 2 | 179 | 0.47 | 0.76 | 32 | IOD |
| 3 | 149 | 0.46 | 0.76 | 26 | IOD |
| 4 | 67 | 0.33 | 0.75 | 16 | empty |
Compared structures
- 4WCK · Crystal Structure of apo Cell Shape Determinant protein Csd4 from Helicobacter pylori · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5ZAD9
- Elsewhere: RCSB PDB 4WCK · PDBe 4WCK · UniProt B5ZAD9
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