MolNFT v1 · #108343 · protein

Ccdb, a topoisomerase poison from escherichia COLI

4VUB: “Ccdb, a topoisomerase poison from escherichia COLI”. X-ray diffraction, 1 ligand (CL). MolNFT v1 #108343 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4VUB
Type: protein
Length: 101 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ccdb
UniProt: P62554
Ligands: CL

Structure

x-ray diffraction · 1 distinct chain · 22% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ccdb	protein	101	22% helix, 38% strand	P62554

Ligands and binding sites

CL · Chloride ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

4VUB · Ccdb, a topoisomerase poison from escherichia COLI · the same entry in another collection · chain A against A, TM-score 1.00
P62554 · AlphaFold monomer V2.0 prediction for toxin ccdb (P62554) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P62554
Elsewhere: RCSB PDB 4VUB · PDBe 4VUB · UniProt P62554

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