MolNFT v1 · #10829 · protein
Solution structure of citrobacter freundii ampd
1J3G · Ampd protein: “Solution structure of citrobacter freundii ampd”. Solution nmr, 1 ligand (ZN), 1 pocket (best druggability 0.58). MolNFT v1 #10829 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1J3G
- Type
- protein
- Length
- 187 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ampd protein
- EC
- 3.5.1.28
- UniProt
- P82974
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.58
Structure
solution nmr · 1 distinct chain · 21% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ampd protein (EC 3.5.1.28) | protein | 187 | 21% helix, 17% strand | P82974 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 175 | 0.58 | 0.81 | 27 | ZN |
Compared structures
- 1J3G · Solution structure of Citrobacter Freundii AmpD · the same entry in another collection · chain A against A, TM-score 1.00
- P82974 · AlphaFold monomer V2.0 prediction for 1,6-anhydro-N-acetylmuramyl-L- alanine amidase ampd… · a predicted model of the same protein · chain A against A, TM-score 0.70
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P82974
- Elsewhere: RCSB PDB 1J3G · PDBe 1J3G · UniProt P82974
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