MolNFT v1 · #108282 · protein
The crystal structure of arabidopsis thaliana CAR4 in complex with two calcium ions
4V29 · AT3G17980: “The crystal structure of arabidopsis thaliana CAR4 in complex with two calcium ions”. X-ray diffraction, 1 ligand (CA), 6 pockets (best druggability 0.52). MolNFT v1 #108282 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4V29
- Type
- protein
- Length
- 330 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AT3G17980
- UniProt
- Q9LVH4
- Ligands
- CA
- Pockets
- 6 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | AT3G17980 | protein | 165 | 4% helix, 47% strand | Q9LVH4 |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 169 | 0.52 | 0.78 | 24 | empty |
| 2 | 220 | 0.52 | 0.76 | 29 | empty |
| 3 | 124 | 0.40 | 0.75 | 15 | empty |
| 4 | 55 | 0.38 | 0.80 | 15 | empty |
| 5 | 81 | 0.37 | 0.77 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 632 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 4V29 · The crystal structure of Arabidopsis thaliana CAR4 in complex with two calcium ions · the same entry in another collection · chain A against A, TM-score 1.00
- Q9LVH4 · AlphaFold monomer V2.0 prediction for protein C2-domain aba-related 4 (Q9LVH4) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LVH4
- Elsewhere: RCSB PDB 4V29 · PDBe 4V29 · UniProt Q9LVH4
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