MolNFT v1 · #108280 · protein

Structure of the GH99 endo-alpha-mannanase from bacteroides xylanisolvens in complex with mannose-alpha-1,3-isofagomine

4V27 · Glycosyl hydrolase family 71: “Structure of the GH99 endo-alpha-mannanase from bacteroides xylanisolvens in complex with…”. X-ray diffraction, 2 ligands (IFM, MAN), 3 pockets (best druggability 0.46). MolNFT v1 #108280 on GenesisL1…

PDB: 4V27
Type: protein
Length: 349 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glycosyl hydrolase family 71
EC: 3.2.1.130
UniProt: D6D1V7
Ligands: IFM, MAN
Pockets: 3 · best druggability 0.46

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glycosyl hydrolase family 71 (EC 3.2.1.130)	protein	349	34% helix, 16% strand	D6D1V7

Ligands and binding sites

IFM · 5-hydroxymethyl-3,4-dihydroxypiperidine · ligand · chains A
MAN · alpha-D-mannopyranose · sugar · chains A
EDO · 1,2-ethanediol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	152	0.46	0.76	25	MAN, IFM, EDO
2	80	0.42	0.79	15	empty
3	58	0.33	0.77	18	empty

Compared structures

4V27 · Structure of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D6D1V7
Elsewhere: RCSB PDB 4V27 · PDBe 4V27 · UniProt D6D1V7

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