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Ligand · IFM

IFM · 5-hydroxymethyl-3,4-dihydroxypiperidine

IFM, 5-hydroxymethyl-3,4-dihydroxypiperidine (C6 H13 N O3, 147.2 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
IFM
Formula
C6 H13 N O3
Class
ligand
Structures
6
PDB entries
5

Binding sites

IFM in 6 structures; the first of them:

  • 5H41 · Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium… · IFM A1203 · binds ARG630, ASP631, TRP758, ASP759, ASP760, GLU917, TYR922
  • 6ZDL · Structure of the catalytic domain of human endo-alpha-mannosidase MANEA in complex with… · IFM AAA506 · binds TYR108, TRP110, HIS222, GLU224, PRO225, TYR268, TYR323, GLU404 and 1 more
  • 6ZJ6 · Structure of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with… · IFM AAA407 · binds TYR46, TRP48, TRP126, HIS154, GLU156, PRO157, TYR195, TYR252 and 2 more
  • 7LOU · Crystal structure of Clostridium difficile Toxin B (TcdB) glucosyltransferase in complex… · IFM A611 · binds ALA266, ASP270, ARG273, ASP286, ILE383, ASN384, GLN385, THR465 and 4 more
  • 8JBO · Crystal structure of TxGH116 from Thermoanaerobacterium xylanolyticum with isofagomine · IFM A901 · binds GLU441, TYR445, THR450, ASP452, VAL453, HIS507, TYR523, TRP531 and 8 more
  • 7LOU · Crystal structure of clostridium difficile toxin B (tcdb) glucosyltransferase in complex… · IFM A611 · binds ALA266, ASP270, ARG273, ASP286, ILE383, ASN384, GLN385, THR465 and 4 more

Residues it binds most

ASP 8, TYR 6, TRP 10, GLU 6, ARG 8, ILE 4, THR 6, GLN 6, PRO 6, ALA 4 (residue and the binding sites it lines).

Found with

  • EDO · 1,2-ethanediol
  • GLC · alpha-D-glucopyranose
  • UDP · Uridine-5'-diphosphate
  • MN · Manganese (II) ion
  • QTE · methylcyclohexane
  • TEW · 6-tungstotellurate(VI)
  • CA · Calcium ion
  • MG · Magnesium ion
  • BGC · beta-D-glucopyranose
  • SO4 · Sulfate ion
  • ACT · Acetate ion
  • EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid

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