MolNFT v1 · #108192 · protein
Kshv lana (ORF73) C-terminal domain, spiral: hexagonal crystal form
4UZC · Orf 73: “Kshv lana (ORF73) C-terminal domain, spiral: hexagonal crystal form”. X-ray diffraction, 7 pockets (best druggability 0.41). MolNFT v1 #108192 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4UZC
- Type
- protein
- Length
- 536 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Orf 73
- UniProt
- Q76SB0
- Pockets
- 7 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Orf 73 | protein | 134 | 34% helix, 19% strand | Q76SB0 |
Pockets
7 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 113 | 0.41 | 0.76 | 19 | empty |
| 2 | 140 | 0.40 | 0.74 | 25 | empty |
| 3 | 89 | 0.40 | 0.77 | 24 | empty |
| 4 | 63 | 0.33 | 0.76 | 14 | empty |
| 5 | 53 | 0.32 | 0.77 | 16 | empty |
Interfaces
3 interfaces between chains.
- B–C · 2210 Ų buried · 21 hydrogen bonds · protein-protein
- C–D · 532 Ų buried · 5 hydrogen bonds · protein-protein
- A–B · 522 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 4UZC · KSHV LANA (ORF73) C-terminal domain, spiral: hexagonal crystal form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q76SB0
- Elsewhere: RCSB PDB 4UZC · PDBe 4UZC · UniProt Q76SB0
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