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Kshv lana (ORF73) C-terminal domain, spiral: hexagonal crystal form

Analyse Kshv lana (ORF73) C-terminal domain, spiral: hexagonal crystal form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4UZC
Type: protein
Length: 536 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Orf 73
UniProt: Q76SB0
Pockets: 7 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Orf 73	protein	134	34% helix, 19% strand	Q76SB0

Pockets

7 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	113	0.41	0.76	19	empty
2	140	0.40	0.74	25	empty
3	89	0.40	0.77	24	empty
4	63	0.33	0.76	14	empty
5	53	0.32	0.77	16	empty

Interfaces

3 interfaces between chains.

B–C · 2210 Å² buried · 21 hydrogen bonds · protein-protein
C–D · 532 Å² buried · 5 hydrogen bonds · protein-protein
A–B · 522 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

4UZC · KSHV LANA (ORF73) C-terminal domain, spiral: hexagonal crystal form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q76SB0
Elsewhere: RCSB PDB 4UZC · PDBe 4UZC · UniProt Q76SB0

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